lar_cluster3d::DBScanAlg Class Reference

DBScanAlg class definiton. More...

Inheritance diagram for lar_cluster3d::DBScanAlg:

Public Member Functions
	DBScanAlg (fhicl::ParameterSet const &pset)
	Constructor. More...
	~DBScanAlg ()
	Destructor. More...
void	configure (const fhicl::ParameterSet &) override
	Interface for configuring the particular algorithm tool. More...
void	Cluster3DHits (reco::HitPairList &hitPairList, reco::ClusterParametersList &clusterParametersList) const override
	Given a set of recob hits, run DBscan to form 3D clusters. More...
void	Cluster3DHits (reco::HitPairListPtr &hitPairList, reco::ClusterParametersList &clusterParametersList) const override
	Given a set of recob hits, run DBscan to form 3D clusters. More...
float	getTimeToExecute (IClusterAlg::TimeValues index) const override
	If monitoring, recover the time to execute a particular function. More...
Public Member Functions inherited from lar_cluster3d::IClusterAlg
virtual	~IClusterAlg () noexcept=default
	Virtual Destructor. More...

Private Member Functions
void	expandCluster (const kdTree::KdTreeNode &, kdTree::CandPairList &, reco::ClusterParameters &, size_t) const
	the main routine for DBScan More...

Private Attributes
bool	m_enableMonitoring
	Data members to follow. More...
size_t	m_minPairPts
std::vector< float >	m_timeVector
std::unique_ptr < lar_cluster3d::IClusterParametersBuilder >	m_clusterBuilder
	Common cluster builder tool. More...
kdTree	m_kdTree

Additional Inherited Members
Public Types inherited from lar_cluster3d::IClusterAlg
enum	TimeValues {   BUILDTHREEDHITS = 0, BUILDHITTOHITMAP = 1, RUNDBSCAN = 2, BUILDCLUSTERINFO = 3,   PATHFINDING = 4, NUMTIMEVALUES }
	enumerate the possible values for time checking if monitoring timing More...

Detailed Description

DBScanAlg class definiton.

Definition at line 34 of file DBScanAlg_tool.cc.

Constructor & Destructor Documentation

lar_cluster3d::DBScanAlg::DBScanAlg ( fhicl::ParameterSet const &  pset )

explicit

Constructor.

Parameters

pset

Definition at line 95 of file DBScanAlg_tool.cc.

{
    this->configure(pset);
}

lar_cluster3d::DBScanAlg::~DBScanAlg

(

)

Destructor.

Definition at line 102 of file DBScanAlg_tool.cc.

{
}

Member Function Documentation

void lar_cluster3d::DBScanAlg::Cluster3DHits ( reco::HitPairList &  hitPairList, reco::ClusterParametersList &  clusterParametersList  ) const

overridevirtual

Given a set of recob hits, run DBscan to form 3D clusters.

Parameters

hitPairList	The input list of 3D hits to run clustering on
clusterParametersList	A list of cluster objects (parameters from associated hits)

Driver for processing input 2D hits, transforming to 3D hits and building lists of associated 3D hits (candidate 3D clusters)

Implements lar_cluster3d::IClusterAlg.

Definition at line 135 of file DBScanAlg_tool.cc.

{
    /**
     *  @brief Driver for processing input 2D hits, transforming to 3D hits and building lists
     *         of associated 3D hits (candidate 3D clusters)
     */
    cet::cpu_timer theClockDBScan;

    m_timeVector.resize(NUMTIMEVALUES, 0.);

    // DBScan is driven of its "epsilon neighborhood". Computing adjacency within DBScan can be time
    // consuming so the idea is the prebuild the adjaceny map and then run DBScan.
    // We'll employ a kdTree to implement this scheme
    kdTree::KdTreeNodeList kdTreeNodeContainer;
    kdTree::KdTreeNode     topNode = m_kdTree.BuildKdTree(hitPairList, kdTreeNodeContainer);

    if (m_enableMonitoring) m_timeVector[BUILDHITTOHITMAP] = m_kdTree.getTimeToExecute();

    if (m_enableMonitoring) theClockDBScan.start();

    // Ok, here we go!
    // The idea is to loop through all of the input 3D hits and do the clustering
    for(const auto& hit : hitPairList)
    {
        // Check if the hit has already been visited
        if (hit.getStatusBits() & reco::ClusterHit3D::CLUSTERVISITED) continue;

        // Mark as visited
        hit.setStatusBit(reco::ClusterHit3D::CLUSTERVISITED);

        // Find the neighborhood for this hit
        kdTree::CandPairList candPairList;
        float                bestDistance(std::numeric_limits<float>::max());

        m_kdTree.FindNearestNeighbors(&hit, topNode, candPairList, bestDistance);

        if (candPairList.size() < m_minPairPts)
        {
            hit.setStatusBit(reco::ClusterHit3D::CLUSTERNOISE);
        }
        else
        {
            // "Create" a new cluster and get a reference to it
            clusterParametersList.push_back(reco::ClusterParameters());

            reco::ClusterParameters& curCluster = clusterParametersList.back();

            hit.setStatusBit(reco::ClusterHit3D::CLUSTERATTACHED);
            curCluster.addHit3D(&hit);

            // expand the cluster
            expandCluster(topNode, candPairList, curCluster, m_minPairPts);
        }
    }

    if (m_enableMonitoring)
    {
        theClockDBScan.stop();

        m_timeVector[RUNDBSCAN] = theClockDBScan.accumulated_real_time();
    }

    // Initial clustering is done, now trim the list and get output parameters
    cet::cpu_timer theClockBuildClusters;

    // Start clocks if requested
    if (m_enableMonitoring) theClockBuildClusters.start();

    m_clusterBuilder->BuildClusterInfo(clusterParametersList);

    if (m_enableMonitoring)
    {
        theClockBuildClusters.stop();

        m_timeVector[BUILDCLUSTERINFO] = theClockBuildClusters.accumulated_real_time();
    }

    mf::LogDebug("Cluster3D") << ">>>>> DBScan done, found " << clusterParametersList.size() << " clusters" << std::endl;

    return;
}

void lar_cluster3d::DBScanAlg::Cluster3DHits ( reco::HitPairListPtr &  hitPairList, reco::ClusterParametersList &  clusterParametersList  ) const

overridevirtual

Given a set of recob hits, run DBscan to form 3D clusters.

Parameters

hitPairList	The input list of 3D hits to run clustering on
clusterParametersList	A list of cluster objects (parameters from associated hits)

Driver for processing input 2D hits, transforming to 3D hits and building lists of associated 3D hits (candidate 3D clusters)

Implements lar_cluster3d::IClusterAlg.

Definition at line 218 of file DBScanAlg_tool.cc.

{
    /**
     *  @brief Driver for processing input 2D hits, transforming to 3D hits and building lists
     *         of associated 3D hits (candidate 3D clusters)
     */
    cet::cpu_timer theClockDBScan;

    m_timeVector.resize(NUMTIMEVALUES, 0.);

    // DBScan is driven of its "epsilon neighborhood". Computing adjacency within DBScan can be time
    // consuming so the idea is the prebuild the adjaceny map and then run DBScan.
    // We'll employ a kdTree to implement this scheme
    kdTree::KdTreeNodeList kdTreeNodeContainer;
    kdTree::KdTreeNode     topNode = m_kdTree.BuildKdTree(hitPairList, kdTreeNodeContainer);

    if (m_enableMonitoring) m_timeVector[BUILDHITTOHITMAP] = m_kdTree.getTimeToExecute();

    if (m_enableMonitoring) theClockDBScan.start();

    // Ok, here we go!
    // The idea is to loop through all of the input 3D hits and do the clustering
    for(const auto& hit : hitPairList)
    {
        // Check if the hit has already been visited
        if (hit->getStatusBits() & reco::ClusterHit3D::CLUSTERVISITED) continue;

        // Mark as visited
        hit->setStatusBit(reco::ClusterHit3D::CLUSTERVISITED);

        // Find the neighborhood for this hit
        kdTree::CandPairList candPairList;
        float                bestDistance(std::numeric_limits<float>::max());

        m_kdTree.FindNearestNeighbors(hit, topNode, candPairList, bestDistance);

        if (candPairList.size() < m_minPairPts)
        {
            hit->setStatusBit(reco::ClusterHit3D::CLUSTERNOISE);
        }
        else
        {
            // "Create" a new cluster and get a reference to it
            clusterParametersList.push_back(reco::ClusterParameters());

            reco::ClusterParameters& curCluster = clusterParametersList.back();

            hit->setStatusBit(reco::ClusterHit3D::CLUSTERATTACHED);
            curCluster.addHit3D(hit);

            // expand the cluster
            expandCluster(topNode, candPairList, curCluster, m_minPairPts);
        }
    }

    if (m_enableMonitoring)
    {
        theClockDBScan.stop();

        m_timeVector[RUNDBSCAN] = theClockDBScan.accumulated_real_time();
    }

    // Initial clustering is done, now trim the list and get output parameters
    cet::cpu_timer theClockBuildClusters;

    // Start clocks if requested
    if (m_enableMonitoring) theClockBuildClusters.start();

    m_clusterBuilder->BuildClusterInfo(clusterParametersList);

    if (m_enableMonitoring)
    {
        theClockBuildClusters.stop();

        m_timeVector[BUILDCLUSTERINFO] = theClockBuildClusters.accumulated_real_time();
    }

    mf::LogDebug("Cluster3D") << ">>>>> DBScan done, found " << clusterParametersList.size() << " clusters" << std::endl;

    return;
}

void lar_cluster3d::DBScanAlg::configure ( const fhicl::ParameterSet &  )

overridevirtual

Interface for configuring the particular algorithm tool.

Parameters

ParameterSet

The input set of parameters for configuration

Implements lar_cluster3d::IClusterAlg.

Definition at line 108 of file DBScanAlg_tool.cc.

{
    m_enableMonitoring  = pset.get<bool>  ("EnableMonitoring",  true  );
    m_minPairPts        = pset.get<size_t>("MinPairPts",        2     );

    m_clusterBuilder    = art::make_tool<lar_cluster3d::IClusterParametersBuilder>(pset.get<fhicl::ParameterSet>("ClusterParamsBuilder"));

    // Recover the parameter set for the kdTree
    fhicl::ParameterSet kdTreeParams(pset.get<fhicl::ParameterSet>("kdTree"));

    // Now work out the maximum wire pitch
    art::ServiceHandle<geo::Geometry const> geometry;

    // Returns the wire pitch per plane assuming they will be the same for all TPCs
    std::vector<float> wirePitchVec(3,0.);

    wirePitchVec[0] = geometry->WirePitch(0);
    wirePitchVec[1] = geometry->WirePitch(1);
    wirePitchVec[2] = geometry->WirePitch(2);

    float maxBestDist = 1.99 * *std::max_element(wirePitchVec.begin(),wirePitchVec.end());

    kdTreeParams.put_or_replace<float>("RefLeafBestDist", maxBestDist);

    m_kdTree = kdTree(kdTreeParams);
}

void lar_cluster3d::DBScanAlg::expandCluster ( const kdTree::KdTreeNode &  topNode, kdTree::CandPairList &  candPairList, reco::ClusterParameters &  cluster, size_t  minPts  ) const

private

the main routine for DBScan

Definition at line 301 of file DBScanAlg_tool.cc.

{
    // This is the main inside loop for the DBScan based clustering algorithm

    // Loop over added hits until list has been exhausted
    while(!candPairList.empty())
    {
        // Dereference the point so we can see in the debugger...
        const reco::ClusterHit3D* neighborHit = candPairList.front().second;

        // Process if we've not been here before
        if (!(neighborHit->getStatusBits() & reco::ClusterHit3D::CLUSTERVISITED))
        {
            // set as visited
            neighborHit->setStatusBit(reco::ClusterHit3D::CLUSTERVISITED);

            // get the neighborhood around this point
            kdTree::CandPairList neighborCandPairList;
            float                bestDistance(std::numeric_limits<float>::max());

            m_kdTree.FindNearestNeighbors(neighborHit, topNode, neighborCandPairList, bestDistance);

            // If the epsilon neighborhood of this point is large enough then add its points to our list
            if (neighborCandPairList.size() >= minPts)
            {
                std::copy(neighborCandPairList.begin(),neighborCandPairList.end(),std::back_inserter(candPairList));
            }
        }

        // If the point is not yet in a cluster then we now add
        if (!(neighborHit->getStatusBits() & reco::ClusterHit3D::CLUSTERATTACHED))
        {
            neighborHit->setStatusBit(reco::ClusterHit3D::CLUSTERATTACHED);
            cluster.addHit3D(neighborHit);
        }

        candPairList.pop_front();
    }

    return;
}

float lar_cluster3d::DBScanAlg::getTimeToExecute ( IClusterAlg::TimeValues  index ) const

inlineoverridevirtual

If monitoring, recover the time to execute a particular function.

Implements lar_cluster3d::IClusterAlg.

Definition at line 72 of file DBScanAlg_tool.cc.

{return m_timeVector[index];}

Member Data Documentation

std::unique_ptr<lar_cluster3d::IClusterParametersBuilder> lar_cluster3d::DBScanAlg::m_clusterBuilder

private

Common cluster builder tool.

Definition at line 91 of file DBScanAlg_tool.cc.

bool lar_cluster3d::DBScanAlg::m_enableMonitoring

private

Data members to follow.

Definition at line 87 of file DBScanAlg_tool.cc.

kdTree lar_cluster3d::DBScanAlg::m_kdTree

private

Definition at line 92 of file DBScanAlg_tool.cc.

size_t lar_cluster3d::DBScanAlg::m_minPairPts

private

Definition at line 88 of file DBScanAlg_tool.cc.

std::vector<float> lar_cluster3d::DBScanAlg::m_timeVector

mutableprivate

Definition at line 89 of file DBScanAlg_tool.cc.

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The documentation for this class was generated from the following file:

• DBScanAlg_tool.cc